Cancer Type: CLL
Date: 2016-06-21 09:23:39
Number of samples:
Total mutations:
Driver mutations: (known: predicted: )
Biomarkers of the tumor:
Biomarkers in other tumors:

  The results of the analysis may take a while even if only few mutations are submitted. Please, check the examples to have an overview of the CGI results.

09:28:50 INFO: Running mutation analysis with OncodriveMUT
09:28:52 INFO: Processing the mutations input file
09:28:52 INFO: The detected format is gtf
09:28:52 WARNING: The ref and alt alleles will be complemented depending on the strand column content
09:28:52 INFO: Annotating the nucleotide mutations to protein coordinates per transcript
Running TransVar (6 seconds, 8574 microseconds ago)
09:28:58 INFO: Selecting one transcript per gene for annotation..
09:28:58 INFO: Retrieving CADD scores
09:28:59 INFO: Matching with several metadata files
09:29:01 INFO: Running the driver prediction
09:29:01 INFO: Considering as sample specific the 59 driver genes of tumors: CLL
09:29:01 INFO: File created with 15 entries: driver_prediction_mutations.tsv
09:29:01 INFO: Arranging the output
09:29:01 INFO: File created with 15 entries: mutation_analysis.tsv
09:29:01 INFO: Summary of the results created summary.tsv
09:29:01 INFO: Alteration analysis finished
09:29:01 INFO: Running drug prescription
09:29:02 INFO: TCGI prescription version 1.0.0
09:29:02 INFO: Biomarkers v1.0 build 20160620
09:29:02 INFO: Bioactivities v1.0 build 20160618
09:29:02 INFO: Cancer types v1.0 build 20160610
09:29:02 INFO: Loading biomarkers
09:29:02 INFO: Loading bioactivities
09:29:02 INFO: Loading alterations
09:29:02 INFO: Checking prescriptions
09:29:02 INFO: Write biomarkers results
09:29:02 INFO: Write bioactivities results
09:29:02 INFO: Prescription finished
09:29:02 INFO: Compress results